I have the information you need and will assist you in recording your transaction, SoniaMB.
You may not have set up the options for refund transactions before the integration process, which may be why QuickBooks only shows the total amount of the sales transaction.
To ensure proper mapping of refund transactions in QuickBooks, select the option to Create Credit Notes and Refunded or Partially Refunded status on the order filter. Then, map a Fallback account and input a Refund Number Prefix.
Check out this article for detailed information: Shopify and QuickBooks Online Integration Guide.
In the meantime, let's address your concern by adding the refund transaction manually. Here's how:
- Click on +New.
- Select Credit Note.
- Fill in the necessary details.
- Tap on Save and Close.
You can also personalise the data of your sales forms within the program. Please read this reference: Customise invoices, estimates, and sales receipts in QuickBooks Online.
Let me know if you have other concerns regarding your sales transactions. Just a few clicks, and I'll be there to assist you again.