I can show you how to match your bank deposits in your bank feeds.
The bank usually records everything as a single record with one total. If you enter the same payments as individual records in QuickBooks, they won’t match the way your bank recorded the deposit. If there are fees that are already deducted from the deposit, you can first put the invoice payment in the Undeposited Funds account. Then, create a bank deposit to combine the payment and the bank charge.
Click the +New button and click Receive Payment.
Select the customer's name so open invoices will show. Set the payment date.
Under the Depositto drop-down, click UndepositedFunds.
Select the invoice to be paid.
Click Saveandclose.
Use Bank deposit to combine payments
Go to the +New button and click Bank deposit.
From the Account dropdown, choose the account you want to put the money into.
Select the payment you just made and scroll down to the Add funds to this deposit section.
Enter the fee as a line item.
Select Bank Charges from the Account field.
Enter the amount fee as a negative number.
Review the deposit total with the bank fee and it should match the deposit in your bank feeds.
Select Save and close or Save and new.
For more details on how to do the process n recording and making a bank deposit, you can click here.