Account has a large wrong negative number balance. Reconcilliation worked all fine, but when I go to generate a report the current balance is way wrong.

It appears as though none of the payments I made into my credit cards or checking account are registered in the current balance, but when I go through the reconcilliation process they are reconciled and everything is ok.

What could be happening here?

Edit: solved.

For anyone else that has this problem:

Large amount of uncleared transactions caused by quickbooks somehow duplicating my credit card payments. I simply deleted the duplicates and the final number turned out ok.