Oh My God! Do not even start to follow the instructions that @JanyRoseB provided, it is so utterly wrong as to be incomprehensible.
from what you say you did the receive payment in QB as you should have. When you do a receive payment, on that screen you can pick the account the payment deposits to (third line down). Most of us use the account called Undeposited Funds.
Undeposited funds is like a desk drawer where you keep payments received until you actually get to the bank to deposit them. And to show that you did that, that is when you use make deposits.
If the payment is not listed in make deposits, then I would guess that you used another account (most likely a bank account) as the deposit to account on the receive payment screen. Check your bank accounts to see if the deposit is made already. If it is in the right bank account, edit and change the date deposited if necessary. If it is in the wrong bank account, you will need to bring up the receive payment screen and change the account deposited to.
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