Hello @nomij
This process is slightly convoluted. The only way to give your employee a non-taxable advance is to use the Reimbursement item. But because this item was designed to actually reimburse an employee for expenses they paid out of pocket, it tracks to an expense account and only lands on the P & L.
When an employee pays back an advance, you can create an advance item on the Deductions side of things. This tracks to a current asset account. Unfortunately, you cannot enter a negative amount in here, which would solve this whole issue if you could.
The only way to marry the two, is that you have to use a JE to CR the initial advance (that was a Reimbursement type) from the expense account it was debited to, and DR the Advance account that the payback was posted to.
Did I mention this is convoluted? :)
Good luck!
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