Bill.com money out clearing account

Hello there, @M4MU. I appreciate the complete details about the negative balance in your bank. Allow me to help share information so you can record the transactions and it will be posted to the right accounts. 

Since we're unable to override the transactions from Bill.com, you'll want to create a journal entry to offset the clearing account so your books will balance in specific ways. Before doing so, I'd still suggest consulting your accountant. They'll be able to share the correct accounts to ensure your books will be accurate. Also, Intuit offers a Find-a-ProAdvisor service for business owners to connect with QuickBooks-certified accountants and bookkeepers.

To create a journal entry, here's how:

1. From the left-hand navigation menu in QuickBooks, select the + New button and then the Journal entry.
2. On the first line, select an account from the Account field. Depending on if you need to debit or credit the account, enter the amount in the correct column.
3. On the next line, select the other account you're moving money to or from. Depending on if you entered a debit or credit on the first line, enter the same amount in the opposite column.
4. Check the amounts - you should have the same amount in the Credit column on one line and the Debit column on the other. This means the accounts are in balance.
5. Enter information in the memo section so you know why you made the journal entry.
6. Click Save and Close.

Additionally, the negative and positive balance in your A/P clearing account will depend on the transactions you've entered. A negative accounts payable balance occurs when a company owes more money to its creditors than it has in cash like vendor credit or bill-payment checks. While accounts payable account shows a positive balance until you receive payment or pay the bill. 

In case you need to reverse a journal entry to swap the debits and credit and categorize your downloaded banking transactions, you can visit our article to be guided in doing it:

• Categorize online bank transactions in QuickBooks Online
• Reverse or delete a journal entry in QuickBooks Online

You're always welcome to get back to me if you need other help in managing your account. I'm more than happy to assist further. Have a great day!

@M4MU 

The Bill.com clearing account is increased by the lump sum of payments made through Bill.com during a sync.  This is the amount Bill.com pulls from your bank account to cover the bills you paid.  The increase in the clearing account has a corresponding reduction in your bank account (debit clearing account, credit bank account).  The clearing account is then reduced by the individual checks/payments made to vendors (debit A/P, credit clearing account).  So, it should zero out each month when it is reconciled.  The fact that the account is -$300K, indicates the corresponding reduction in your bank account was never entered or, somehow, the payments have been recorded twice.  Has the clearing account ever been reconciled?  Is your A/P balance accurate?  How about your bank balance?