Thank you for visiting the QuickBooks Community. I'll be sharing steps to ensure you can prepare late 1099s.
Since the Prepare 1099 button is no longer an option to click, you need to file the late tax form outside of the program. That said, you need to manually fill out the late 1099 form and submit it directly to the agency or IRS. Beforehand, I suggest pulling up any 1099 reports in QuickBooks to get detailed data you can use to help you in putting the correct information on the said tax form.
Here's how:
Go to the Reports menu in the left panel.
Choose the appropriate 1099 report.
Go to the Report period and select the specific date.