Greetings, @AMP01.
You can create a refund receipt and use Undeposited Funds in the Deposit To field. Then, you can create a bank deposit to include the refund receipt and the charges. I can guide you in doing so.
Here's how to create a refund receipt:
- Go to the New (+) icon.
- Choose Refund Receipt.
- Select the Customer ▼ dropdown, then select the customer you want to refund.
- From the Refund From ▼ dropdown, select Undeposited Funds.
- Add all products or services the customer returned in the Product or service column.
- Make sure to fill the quantity, rate, amount, tax, and other fields accordingly.
- Click Save and close.

Once completed, you can now make a bank deposit. Here's how:
- Select + New.
- Choose Bank Deposit.
- From the Account ▼ dropdown, choose the account where the money was deposited.
- Mark the refund receipt you've initially created.
- Go to the Add fund to this deposit section.
- Enter the deposit and the charges.

- Click the Save and Close button.
Now, you can match it with your download stripe deposit.

Lastly, I'd recommend consulting with an accountant so you'd be guided in accurately recording your income and expenses.
Keep us posted if you have other questions or concerns. I'm always here to help.