Can i set up payroll so that when annual leave is taken it comes off the accrued leave total?

Hi DaveMitchell15, Thank you for reaching out on this. Please see the 2 articles from Payroll support on how to set up leaves and how to process leaves in pay runs. 

1. Leave Categories - https://support.yourpayroll.com.au/hc/en-au/articles/200265754

2. Leave - Entering Leave Taken - https://support.yourpayroll.com.au/hc/en-au/articles/200035779-Leave-Entering-Leave-Taken

Please let us know if they are helpful to you. Thank you.