GST return filed, but reconciliation caused changes

So I was delayed getting the reconciliation done on a quarter.  Went ahead and filed the GST based on what was there, then went in and reconciled.  Needed to add a missing transaction.

OK, so figured next quarter the GST filing would pick that up.  It does seem to pick it up, but after I file for the next quarter, it still shows those incremental GST amounts as owing.  They show up on a GST report for the prior quarter, and they of course end up in the GST owing account on the trial balance.  How do I 'clear' them from the prior quarter?