Hi @SGI
https://www.gov.uk/guidance/vat-imports-acquisitions-and-purchases-from-abroad would be worth reading.
(1) Add supplier's invoice as you would a UK supplier but use a zero-rated VAT code. I have created an Import/Export code but Z=0% or Exempt will be OK.
Others may tell you to use NoVAT (= Outside the Scope of VAT) but this will mean that the purchase is not shown on the VAT return.
(Goods purchased from outside the EU are only Outside the Scope of VAT while they remain outside the EU.)
(1a) Value here depends on whether you have Multi-Currency enabled. If so, enter value in USD. If not, enter calculated cost in GBP.
(2:1) You will probably have received an invoice from the clearing company. Enter this as you would a normal invoice. The Duty is an Expense so I usually enter in the same account/category as the related goods (i.e. Cost of Goods Sold or the Expense Account).
Duty is not reclaimable, so no need to get too deep into the technicalities or to itemise the percentages unless you want to.
I don't think there is a way to specifically link this expense to the goods purchased - again, no need to go too deep, other than for your own information (maybe add a memo?).
(2:2) Import VAT can be paid to the clearing company (using their deferment account) or paid direct to HMRC FAS.
If paid to the clearing company it will be shown on their invoice - enter as a 100% VAT transaction as you have found out. You will also get a C79 form from HMRC next month - make sure you keep this for your records.
If paid direct to HMRC, the C79 is your 'invoice'. Enter into QBO as a 100% VAT transaction to reclaim the VAT.
(2:3) The deferment fee is similar to the duty paid - an expense. Up to you how you account for it - as a service charge, an add-on to the shipping costs, or as a Cost of Goods.
I find that some companies make this fee VATable & some non-VATable ... right or wrong, I don't know but check your invoice & use appropriate VAT code when entering into QBO.
Hope this helps.