Hello uleytax,
Welcome to the Community - thank you for your question!
To account for fees, follow the below instructions:
1. Create the invoice for the full amount (fees included, say £500)
2. Receive payment to Undeposited funds (full amount)
3. Plus sign > Bank deposit
4. Tick the invoice on the top part
5. On the bottom where it says Add deposit, choose the same customer
6. Choose an expense account (say Fees)
7. Enter the amount as a minus figure (say -15)
8. Now the deposit should be for £485 which is the amount they've received, and £15 should be on the fees account as the fee (edited)

Please let us know if you have any further questions.
Thanks,
Talia
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