Im using quickbooks SE, i am finding it difficult to ensure all payments are made as it doesnt match to the invoice automatically. i want to be able to run a report of one customers invoice versus their payments, so i can match payments correctly?

Hi aimiecaff,

Thank you for raising your concern about payments and invoices.

I can see how challenging it is to keep track of the payments especially when their amounts are reduced to fees. However, the report that you're looking for is not available in QuickBooks Self-Employed. Please note that its invoicing feature is for record purposes and for issuing invoices to customers only. Most of the transactions are manually entered here.

What you can do is just recognize the non-business deposits or transfer transactions, and you can assume that the rest are for your business income.

Here's an article for your additional reference: Manually add transactions in QuickBooks Self-Employed.

If you have any other concerns, feel free to go back to this thread.