Invoicing a client I have to add their commission who they then fwd to their client When my client pays me it’s less than the original invoice, how do I clear

Hello Craig-ctselectri, 

Welcome to the Community page, 

What you need to do in order to record this in Quickbooks is:-

create a bank deposit and then on add to this transaction use a fee/commission option you need to set this up in the chart of accounts section and then you just need to minus off or add the amount then match at the banking page.