Cheques paid into bank which are showing as as payment received against invoice which vat has been paid.Deposit shows in vat detail report as vat owing so paid twice

Hi there, kbrooks55.

I'm glad you came here and share your concern with us. Let's get this straightened out.

There is a possibility that the transactions were recorded twice the reason why it's showing as paid in double. You might have recorded the payment from the VAT page and the other one was added on your bank feeds instead of matching them.

Let's undo and match them with the correct transaction. The undo transactions will be moved to the For Review tab so you can match them.

Here's how:

1. Go to Banking.
2. Select the blue tile for the account you want to review.
3. Select the Reviewed tab.
4. Find the transaction you want to undo.
5. Select Undo from the Action column. This removes the added record from your accounts in QuickBooks.
6. Go back to the For Review tab. 

Should you need reference on how to match downloaded bank transactions in QuickBooks Online (QBO), you can check this article.

This will correct your VAT Detail report information. You can always get back to me if you have other questions and I'll do my best to help you out.