Your confusion ends here, @JHelming1.
Allow me to fill you in on everything about the direct deposit fees for QuickBooks Desktop with Basic payroll.
There will be a standard fee of $1.75 for every Direct Deposit transaction processed in QuickBooks for employees and vendors for existing customers using the old payroll services. However, if you currently subscribe to the new payroll offered by Intuit, it does not have Direct Deposit fees for employees. But there will be additional fees that may apply to the number of employees you process payroll at a given month period, which is $2/employee per month.
Besides, if you're processing Direct Deposit for 1099 contractors (which isn't included with the per-employee fee), you'll still get a $1.75 fee for every Direct Deposit check paid towards the vendor account.
You might want to check out this article to learn more about direct deposit: Direct Deposit Payroll for Small Business.
Please visit our Community forums again if you need further assistance managing your direct deposit transactions. I'm always here to help. Have a wonderful day!