I paid the pastor's SECA Allowance outside of payroll and need this amount included on the Quarterly 941. How do I make it show up on the 941?

I've got you covered, kcaldwell. I'll help you how to manage payments outside QuickBooks. 

How you've set up an employee profile can affect your tax forms. To show payments made outside QuickBooks, update your employee's profile and contact our Payroll Support Team to make payroll adjustments. These steps would help you include the paid SECA allowance on quarterly tax forms.

Here are the steps on how to update an employee profile:

1. Go to Payroll. 
2. Navigate to Employees, and choose an employee.
3. Click Pay types and hit Edit.
4. Select Additional pay types. 
5. Choose Clergy Housing (Cash) or Clergy Housing (In-Kind), and enter an amount.
6. Save, and then Done.

Moreover, kindly follow the steps below to reach our payroll support team:

1. Sign in to your Quickbooks company.
2. Click on Help.
3. Select Contact Us.
4. Type your concern, then select Let's talk.
5. Choose Start a chat or Get a callback.

Also, you can learn more about setting up a housing allowance item for clergy through this article: Set up clergy on Payroll.

Finally, you can go through this article to learn about reports you can use to manage your QuickBooks payroll account: Make use of payroll reports.

Let me know in the comments if you need further help with your tax forms in QuickBooks Online Payroll. I’ll pop right back in to answer them for you. Take care.