I hate giving 'it depends' as an answer but... it depends!
You need to check how the accountant is (has been) classifying the payments. Replicating it should then be quite easy.
The most likely is that the payments are being classed as Dividends (similar to Drawings above). As a shareholder of a limited company there is a (slight) tax benefit to taking money out as a dividend (a distribution of profits after corporation tax has been paid).
Entering the Dividend payments into QBO is very similar to entering Drawings.
However, it's also possible that the payments are classed as PAYE (straightforward wages) but this wouldn't have the same tax advantage.
You would also have to report each payment under RTI (but this can be done using HMRC's free Basic PAYE Tools), pay monthly PAYE/NIC contributions & enter these all into QBO.
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