Hi Brooklynz,
You can use the 'Resolve' tool when you are matching your payments as this marks the invoice as paid while accounting for the fee:
- Go to the 'Banking' tab, select the relevant transaction and 'Find Match'.
- Locate and select the invoice in the list. In the 'Payment' field to the right, enter the full amount of the invoice.
- Scroll down to the bottom. You will see a difference which should total your fee.
- Select the 'Resolve' option. This will create a line to add a resolving transaction. Enter a category to assign this to (eg Bank charges and fees or so on - if you don't see one relevant to you, you can create your own from this dropdown by selecting '+ Add New'.
- Enter a date, a memo/class etc as desired, then enter the amount of the fee as a negative figure, then Save.
This will mark the invoice as fully paid and resolve the difference of the fee.
- Kass