Having a price updates on product/services and some templates got updated with annual fees while others with monthly fees were not. Has anyone had this problem?

Hello Cocsc, 

Welcome to the Community page, 

Where they all on a deal?  If you are an accountant and they were all on a bundle price then they will all go up at the same time, if you have taken over the billing from other clients then it will be from when the accounts were open.