Hello, Processing. I’m here to guide you through the steps for recording the deduction from the overpayment made by your customer.
First, we'll need to create a credit memo for the overpayment. If you have already recorded the payment, including the overpayment, you can skip this step, as it will automatically be recorded as a credit.
Here's how to create a credit memo:
- Go to + New and select Credit memo.
- Choose the appropriate customer in the dropdown.
- Enter the Credit Memo Date, Amount (overpayment), and fill in the necessary details.
- Once done, select Save and close.

Next, create an expense transaction reflecting the overpayment amount:
- Go to + New and select Expense.
- Choose the preferred customer in the Payee dropdown.
- Select the bank the money is being refunded from in the Payment account dropdown.
- In the Category field, select the Debtors account (Accounts receivable).
- In the Amount field, enter the amount of the refund.
- Fill in the necessary details.
- Once done, select Save and close.

Lastly, link the expense and the credit through the Receive payment transaction:
- Go to + New and select Receive payment.
- Add the Customer and select the Payment method and Deposit to.
- Tick the expense we created under Outstanding Transactions and tick the Unapplied Payment under the Credits.
- The balance should be 0 as they will cancel each other out.
- Select Save and close.

If you have Online Banking, navigate to Transactions, then Bank transactions, and match the record you found.
Please refer to this article for more details: Record a customer refund in QuickBooks Online.
Additionally, you can run a report for your customers to get an overview of your accounts receivable transactions.
I'll be here to assist further if you have other questions about the steps, Processing. Take care.